FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane4_Index12_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 20719679 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4391635 | 2.6310408 | 5.486674 | 1 |
| CCTGG | 4366020 | 2.6003864 | 6.1662617 | 1 |
| CTTCT | 4551520 | 2.5143058 | 5.6298056 | 1 |
| CTGGA | 4155100 | 2.4427702 | 8.906652 | 1 |
| TCCAG | 4091035 | 2.3604198 | 5.7264295 | 2 |
| CTGCT | 4037420 | 2.3158522 | 5.0798845 | 1 |
| CTCCT | 4109150 | 2.3132033 | 8.039662 | 1 |
| CTGGG | 3758455 | 2.2809017 | 8.531608 | 1 |
| CAGGA | 3804880 | 2.2500453 | 5.5968533 | 1 |
| CTTCA | 3954815 | 2.1975405 | 5.7368026 | 1 |
| CCCAG | 3708845 | 2.1806953 | 7.456327 | 1 |
| CTCCA | 3832255 | 2.1700284 | 8.178086 | 1 |
| CAGAA | 3637605 | 2.083866 | 5.075149 | 1 |
| CTCTG | 3532730 | 2.0263636 | 6.360404 | 1 |
| CTGGC | 3179710 | 1.8938243 | 5.6098146 | 1 |
| TGGAA | 3221235 | 1.8692719 | 5.2327175 | 2 |
| CTGAA | 3229625 | 1.8393192 | 5.564297 | 1 |
| CTCAG | 3006040 | 1.7344062 | 6.2377706 | 1 |
| CTTTG | 3023500 | 1.7018317 | 5.102535 | 1 |
| CTGGT | 2859420 | 1.6712056 | 5.260777 | 1 |
| CTTGG | 2806100 | 1.6400424 | 5.4038224 | 1 |
| CTCCC | 2708285 | 1.5536616 | 5.2369757 | 1 |